rs245606043 SNP Detail

Summary

• ID
  rs245606043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7347811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGAAAAGT GTGATTCGAT
  TTGAAAATCA GTACAGATTC TCTCTTGTTA CCATGTTTTG TTTTCCAGAG AGGATTATAA
  AGATGAAAGA ATGTCATTAA ACTGGTGAAT AATTGTACCA TCTACAAAAA GCTTTGGCTA
  AATTACTTTA GCTCAATATA ATTAGATTAC ATTTCTAATA GAGTGTTGTG TATTGGTCTC
  Y
  CACTCCATTT GTCTTTTATT TGAGGTAGTA GTTTAATATC CAGTAATAAT GCAAGATTTG
  GACTTTGCTT AGTCCATGTG ACCACTTCAA GATTTTATGA TAGTTACAGC ATGTTCTCTC
  TGCGATTTAT CTCATATATT TATTCATAAG TATTTTAAGT AAGATGTGAA ATTTTACCTT
  TTTCTAATTA AAAAAACTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560233	MGP_WTSI_9_7347811	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245606043					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560233	MGP_WTSI_9_7347811	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7347811 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr83683	transcription start site region 83683	1657 bp downstream
Tssr83684	transcription start site region 83684	401 bp downstream
Tssr83685	transcription start site region 83685	338 bp downstream
Tssr83686	transcription start site region 83686	289 bp downstream
Tssr83687	transcription start site region 83687	271 bp downstream
Tssr83688	transcription start site region 83688	392 bp upstream
Tssr83689	transcription start site region 83689	757 bp upstream
Tssr83690	transcription start site region 83690	793 bp upstream
Tssr83691	transcription start site region 83691	812 bp upstream
Tssr83692	transcription start site region 83692	843 bp upstream
Tssr83693	transcription start site region 83693	879 bp upstream
Tssr83694	transcription start site region 83694	905 bp upstream
Tssr83695	transcription start site region 83695	977 bp upstream
Tssr83696	transcription start site region 83696	1032 bp upstream
Tssr83697	transcription start site region 83697	1091 bp upstream
Tssr83698	transcription start site region 83698	1246 bp upstream
Tssr83699	transcription start site region 83699	1296 bp upstream
Tssr83700	transcription start site region 83700	1344 bp upstream
Tssr83701	transcription start site region 83701	1389 bp upstream
Tssr83702	transcription start site region 83702	1426 bp upstream
Tssr83703	transcription start site region 83703	1909 bp upstream
Tssr83704	transcription start site region 83704	1941 bp upstream
Tssr88064	transcription start site region 88064	879 bp downstream
Tssr88065	transcription start site region 88065	980 bp downstream