rs245613392 SNP Detail

Summary

• ID
  rs245613392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164907745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTGCCT CAGTTTGTGT
  GAGACCCTCA GGGATGCCCC TAATCTCGGG AGGCTTCAGC CAACTTGTAA AGGTGCTGAG
  GGCCTTTCTC ACACAAGGCT AGAGCACGCA CGCATTTTCT CTGAAGCCTC TCTTCCACCA
  CATCCCGGTT TTCCTTCGCC ATGTCCCTTG CCATGTCCCC TCTGTCCCCT CCTCCCAGGA
  Y
  CTTCCATCCA CACCACACAT CTCCACTCCT GTCCTGCCTC TGGCTGCCCA CTCTGCTGCA
  ACGGTCCTCT CACCAGTCAG GTCACTCCCT AGCTGCCTGC CTGCAGCTGC CCTGCCTGCA
  GCTGCTCATC ACCGCACTTG TCACCATGTG ACTCCCCTCC TGTCACACTG TTCCTACTTA
  GCTGGGTCCC ACTTTCCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356446780	MGP_WTSI_2_164891325	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245613392					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356446780	MGP_WTSI_2_164891325	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164907745 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Tssr21708	transcription start site region 21708	1662 bp downstream
Tssr21709	transcription start site region 21709	1620 bp downstream
Tssr21710	transcription start site region 21710	886 bp downstream
Tssr21711	transcription start site region 21711	823 bp downstream
Tssr21712	transcription start site region 21712	800 bp downstream
Tssr21713	transcription start site region 21713	106 bp downstream
Tssr21714	transcription start site region 21714	834 bp upstream
Tssr21715	transcription start site region 21715	880 bp upstream
Tssr21716	transcription start site region 21716	934 bp upstream
Tssr21717	transcription start site region 21717	1021 bp upstream
Tssr21718	transcription start site region 21718	1067 bp upstream
Tssr21719	transcription start site region 21719	1158 bp upstream
Tssr21720	transcription start site region 21720	1361 bp upstream
Tssr21721	transcription start site region 21721	1404 bp upstream
Tssr27603	transcription start site region 27603	441 bp upstream