rs245613416 SNP Detail

Summary

• ID
  rs245613416
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163485249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACCCGTGT TACCAATAAA
  GCCTCTTGTT GTTTGCATCC GAATCGTGGT CTCGCTGTTC CTTGGGAGGG TCTCCTCAGA
  TTGATCGACT ACCCGTCTCG GGGGGTCTTT CAGCAAGACC TAATCACCTG AGTTACTCAT
  CACCAAAACT CAGTCTTCCA CAGATACACT CTTTTCAGGA AAAAAAAAAA AAAAAAAAAA
  G
  CCAGGAAAGT GGCATACTTC TGTAACCGCA GCACTCAGGA GGCTGAGGCA GAAGGATCTG
  CAGTTCTAGA CAGGCTGAGC TAACAGAGTG AAATCCTGCC CCCACCCCCA CCCCGCCGCC
  CCAAGTAATA ATAATGTGAA GCATTTTACT AAGACATGCC AGTAGTGGGG ACTCACATCT
  GTAGTTTCGG CACTAGGCTG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356412359	MGP_WTSI_2_163469065	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs245613416					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356412359	MGP_WTSI_2_163469065	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163485249 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
0610039K10Rik	RIKEN cDNA 0610039K10 gene			1521 bp upstream
Cpgi12639	CpG island 12639			1222 bp proximal
Rr397465	regulatory region 397465			372 bp downstream
Rr397466	regulatory region 397466			850 bp upstream
Rr397467	regulatory region 397467			1663 bp upstream
Rr569445	regulatory region 569445			57 bp distal
Rr569446	regulatory region 569446			944 bp proximal
Rr569447	regulatory region 569447			1792 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr21481	transcription start site region 21481			1911 bp upstream
Tssr27320	transcription start site region 27320			22 bp upstream
Tssr27321	transcription start site region 27321			1361 bp downstream
Tssr27322	transcription start site region 27322			1722 bp downstream
Tssr27323	transcription start site region 27323			1752 bp downstream
Tssr27324	transcription start site region 27324			1778 bp downstream
Tssr27325	transcription start site region 27325			1796 bp downstream
Tssr27326	transcription start site region 27326			1818 bp downstream