rs245618541 SNP Detail

Summary

• ID
  rs245618541
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:36007195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAAAAT AGATTGTTCT
  GAAGAGAAGA AGAAGAAGAA GGAGGAGGAG GAGGAGGAGG AGGAGGAGGA GGAGGAGGAG
  GAAGAAGACC AGCATCACTG GGATAAAATC TTCTGGGAAG TGTTTTCAGA GAACATGAAG
  AAGCTGTGAG AGGCCAGAAA ACATTATTGG TGAAGGTGTA GGCTTAGTTG CAGCTGACAT
  Y
  CCAAGACAGA AGGGGTCATG CAAAGAAGTT GTGAGTTGGC ACTATGAAGA GAGCCTATGA
  GAGACTAGTG GTGAAGCTTA GTTGTAGAGT AAGATCCCAA TGTATTAGAT GCCAGTGCAA
  TGTGATGACC ACCAAGAATA GAAGCAACAG TGGAGTGGAG TGAACTAGAG CCTAGAGTTC
  TTCAAAGGGC AGAGCTGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321084835	CHEV_4_35954228	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245618541					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:36007195 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lingo2	leucine rich repeat and Ig domain containing 2			Intron
				Noncoding-Transcript-Variant
Tssr41223	transcription start site region 41223			1188 bp upstream