rs245620442 SNP Detail

Summary

• ID
  rs245620442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:29475758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGATGGAA AGGGGTAAGG GTAATGAGAT GGCTACGTGA
  ATAAAGGAGC TTATTTCAAG CCTGAGTTCC TGAATTCAGT GTGTGTATAC AAATAAAAAA
  R
  ACAAAAATTT TTTAAAGAAA ATGAGTGGAC TGAGGGACCT GAGTTTAGGG TAGACAATGA
  GAGATAATGG TAAAGCGTGC TTTGGGATAA GAAACTTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323610906	CHEV_11_29425758	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245620442					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29475758 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2674	CpG island 2674			296 bp proximal
Gm57396	predicted gene, 57396			221 bp downstream
Mtif2	mitochondrial translational initiation factor 2			mRNA-UTR
				Noncoding-Transcript-Variant
Rr369145	regulatory region 369145			536 bp upstream
Rr444173	regulatory region 444173			65 bp proximal
Rr444174	regulatory region 444174			616 bp proximal
Rr444175	regulatory region 444175			710 bp proximal
Tssr100719	transcription start site region 100719			649 bp upstream
Tssr100720	transcription start site region 100720			665 bp upstream
Tssr107213	transcription start site region 107213			585 bp downstream