rs245629560 SNP Detail

Summary

• ID
  rs245629560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8777658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACATGAAA GGACACGTGA
  TAAAGGATTC TTTGCTAAAA ACTGGCATGT ATTGGCCTGC CTTCCATTGC ACAGTTGAGT
  TGAATTTGTC AGGACTCCAT AGGGAGAAAT GCACCAAAAA ACTTTTGGTG GTGTGCTGCA
  GTTTCTTGCT GCTTCTTCGG ACTTGGGCTG ATTGGCAGAG TGATGTCAGG TAAGACAGAC
  R
  CATGTGCTGC GTCAAGACTC ATGGAGAACA TGTGATGTTT GGAGAGAGTA TAAGTAGGAC
  TCAGTGGATG GTGATAGAGG CTGAGCTAGG CTTGCTTCTA GAGCTAGCTA TGCAATGCTT
  GTAGGTCTCA AGTCTGCTTA TCTCATCCCT GAGAGAGGCA CAGCCTAGAA CTTTTCGTAG
  TGTTCCTCCT GGTCCCACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401708182	MGP_WTSI_19_8874784	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245629560					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401708182	MGP_WTSI_19_8874784	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8777658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10575	CpG island 10575	1637 bp distal
Cpgi10576	CpG island 10576	1915 bp proximal
Polr2g	polymerase (RNA) II (DNA directed) polypeptide G	1737 bp upstream
Rr363766	regulatory region 363766	1257 bp distal
Rr363767	regulatory region 363767	1342 bp proximal
Rr405845	regulatory region 405845	1893 bp upstream
Tssr158056	transcription start site region 158056	1899 bp upstream
Tssr158057	transcription start site region 158057	1876 bp upstream
Tssr158058	transcription start site region 158058	1862 bp upstream
Tssr158059	transcription start site region 158059	1824 bp upstream
Tssr158060	transcription start site region 158060	1729 bp upstream
Tssr158061	transcription start site region 158061	1701 bp upstream