rs245630421 SNP Detail

Summary

• ID
  rs245630421
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:33878124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCAGTCT GCAGGGAGGG
  GTCCTTGGCC AGAGCAGGAG TAACAGTAGG CAGAGCTGCC CAGCTCTAGG GTGGACACAC
  AGGGATGAGA GCATGAGGGT TCTGGGGCCA GGGCTTTCCC TGCTCAGCTA TCTGGGAAAG
  ATAAGGGTGA TGAGTAAGCC AGTGAAAGGT GTTCGTAACC CACGAGCCAT TCCCCCCCCC
  M
  CCCCCCCCAT GAGCAGTTTT AAGTTCTTCA AGCCACATAC AGCCAGACTG GGCAGAAGCA
  CTGAGCCAGG TCCCCATGTA TCTGGCTCCC ATAGGCTTCA TCAGACCTTG TGGAACTTGT
  CTGAAAGTGA GACAAGGTTC CCTGCCTTGT GAGGGTAGAG AGGCCATCAG TCACAGGGTG
  GTTGCTGTTA CAGAAGTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	BALB/cByJ	BUB/BnJ	C57BL/6J	CE/J	DBA/2J	MA/MyJ	NON/ShiLtJ	PL/J	SPRET/EiJ	SWR/J
ss364486318	MGP_WTSI_5_34063429	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	C	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	BALB/cByJ	BUB/BnJ	C57BL/6J	CE/J	DBA/2J	MA/MyJ	NON/ShiLtJ	PL/J	SPRET/EiJ	SWR/J
rs245630421					SNP	A	A	A	A	A	C	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364486318	MGP_WTSI_5_34063429	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33878124 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15741	CpG island 15741	660 bp proximal
Fgfr3	fibroblast growth factor receptor 3	944 bp upstream
G630022F23Rik	RIKEN cDNA G630022F23 gene	within coordinates
Rr366768	regulatory region 366768	450 bp upstream
Rr407322	regulatory region 407322	within coordinates
Rr609611	regulatory region 609611	454 bp proximal
Rr609612	regulatory region 609612	1036 bp proximal
Rr609613	regulatory region 609613	1537 bp proximal
Tssr45829	transcription start site region 45829	42 bp upstream
Tssr45830	transcription start site region 45830	989 bp upstream