rs245633799 SNP Detail

Summary

• ID
  rs245633799
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129146571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGGAAGC TCTCTGCTCT
  GGAGTAGTGA GCTGTCTTTT GGAACACATA TTCTGTCCTT TGCAGGGATC CACTGTGGGA
  GTGGAGTGCT TCGTTCTGTT CTAGAAGAAT TGTGAAAAGC CAGGGATGTA GATAACTCTG
  TGCTTTGAAA ACAGAAAGTT TGAAAGAGGC AATGAAACTC GGGGGTGGGG CGAGGGGGGG
  R
  GAGTGACCGA CTGATCATTA CCTTCCTGTT GCAGGTCATT TAACCAAGTG GTGCTGAGAT
  AGTGTTTGTC CACATCCTGA TATATAGTTT GGTTGAGGGA ATCATTCATG ACAAACTTCT
  GCCTGACGAG CTTCATCAGT TTGTATCTCA AATCACTCTG GTAGGTGTAA GGTGCTGATC
  TGGGTTGGAT GGTCTCTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355636772	MGP_WTSI_2_129130387	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	A	A	G	G	G	G	A	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245633799					SNP	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	A	A	G	G	G	G	A	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355636772	MGP_WTSI_2_129130387	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129146571 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	within coordinates
Tssr26214	transcription start site region 26214	1680 bp upstream
Tssr26215	transcription start site region 26215	1661 bp upstream
Tssr26216	transcription start site region 26216	866 bp upstream
Tssr26217	transcription start site region 26217	844 bp upstream
Tssr26218	transcription start site region 26218	62 bp downstream
Tssr26219	transcription start site region 26219	113 bp downstream
Tssr26220	transcription start site region 26220	143 bp downstream
Tssr26221	transcription start site region 26221	162 bp downstream
Tssr26222	transcription start site region 26222	1237 bp downstream
Tssr26223	transcription start site region 26223	1262 bp downstream
Tssr26224	transcription start site region 26224	1514 bp downstream
Tssr26225	transcription start site region 26225	1807 bp downstream
Tssr26226	transcription start site region 26226	1850 bp downstream
Tssr26227	transcription start site region 26227	1887 bp downstream
Tssr26228	transcription start site region 26228	1910 bp downstream
Tssr26229	transcription start site region 26229	1944 bp downstream
Tssr26230	transcription start site region 26230	1987 bp downstream