rs245649278 SNP Detail

Summary

• ID
  rs245649278
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5123305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGTACCT CCCACTTAGG
  AAAAGAAACC AGTAACCCTT CCCACTCATG CTCCGCCTCC TGCCTCCCTG GATGTGAAAT
  ACACTCGGTT TGCGCGCACA CAACCACCAC GCGCACGCGC ATACGCTCTA ACCCTCTTAC
  CTCTAAACAG AAAGCCCCCC GCCCCCCCCC CATCCCAGTC CTGGAGCCCC TTTTCCTTCT
  Y
  AGTCATACGG TTAAAGAGCC GGACAGTGTC AATGATTGGC CATTTAGCGC CATCTGGCGT
  TGGCAACCAC AGACTTACAG TCACCGGAAG GTTATAAAAT GCATACTAAT TGTTCAATAA
  TTATTTGATT TGTTTGTGCT ACTAAATATC TGCTGATTCC CCTGCCTCAC AAGACAAATA
  TTCTTCCTCA TGTTTGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401649327	MGP_WTSI_19_5073277	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245649278					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401649327	MGP_WTSI_19_5073277	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5123305 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10429	CpG island 10429	1509 bp distal
Cpgi10430	CpG island 10430	860 bp distal
Gm46658	predicted gene, 46658	within coordinates
Rr405800	regulatory region 405800	979 bp downstream
Rr405801	regulatory region 405801	within coordinates
Rr542921	regulatory region 542921	1038 bp distal
Rr542922	regulatory region 542922	within coordinates
Rr542923	regulatory region 542923	44 bp proximal
Tmem151a	transmembrane protein 151A	within coordinates
Tssr157540	transcription start site region 157540	1187 bp upstream
Tssr157541	transcription start site region 157541	1148 bp upstream
Tssr157542	transcription start site region 157542	754 bp upstream