rs245653229 SNP Detail

Summary

• ID
  rs245653229
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115507403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACACACAC CTCGAAGAGA CCAGCCCACC TTCTCATTAC CATGCCAAAA AAAAAGTAGC
  TTTGTAGGAG GTCATTTGAC AAGTAAGCCG TTTTCTGGGC TCTATTAATA ACTCCCTAGG
  AGCAGGTGTG CTGAGGGTCC GATGGTCAGA GGGTAAAGCG AGGTGTGGTG TGGGCCGCCA
  K
  GCCTTGAAGT AAACAGGAAA GCTTGGCGCC TCCGTGAAGC AACTGCCTAT TCTTCTTTTT
  AAAACTTCTG TCTTTACTCC TCCGCCTCAC CCAACCGCCC CACAAGTTCA TTTATTACGT
  TTAAAGGTAT TCACGGAGAA CCCCTCCTAA GAGATTGCAG CAAATCCTAG ACGTTTCTCC
  ATGAACTGAT TGCTTAAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359333858	MGP_WTSI_3_115416672	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245653229					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359333858	MGP_WTSI_3_115416672	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115507403 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13724	CpG island 13724	1203 bp distal
Cpgi13725	CpG island 13725	890 bp proximal
Gm9889	predicted gene 9889	1269 bp upstream
Rr583584	regulatory region 583584	744 bp distal
Rr583585	regulatory region 583585	779 bp proximal
Rr583586	regulatory region 583586	1308 bp proximal
S1pr1	sphingosine-1-phosphate receptor 1	within coordinates
Tssr31332	transcription start site region 31332	1402 bp upstream
Tssr35273	transcription start site region 35273	1200 bp upstream
Tssr35274	transcription start site region 35274	1141 bp upstream
Tssr35275	transcription start site region 35275	887 bp upstream
Tssr35276	transcription start site region 35276	7 bp upstream
Tssr35277	transcription start site region 35277	39 bp downstream
Tssr35278	transcription start site region 35278	1026 bp downstream
Tssr35279	transcription start site region 35279	1048 bp downstream
Tssr35280	transcription start site region 35280	1100 bp downstream
Tssr35281	transcription start site region 35281	1135 bp downstream
Tssr35282	transcription start site region 35282	1179 bp downstream
Tssr35283	transcription start site region 35283	1277 bp downstream