rs245671117 SNP Detail

Summary

• ID
  rs245671117
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122344697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCGTGGAG GCCCGCTTCG
  GTTTCTGTCG CGGGGCCCGC GGTGTCTCCT AGCGTAACCG GAACTAGCCG TTGCGGGCCG
  GCCTTCTCTG CGCTCGGGCC TTGAGGTGAT CTCCGAGCGC CCCGGACCCC TCCTTCCTCG
  CCGTCCCCCT CGGCTCGGCC GCTCGCCTCT CACAGCCGCC GGCATGAGCT CCAGGCCGCC
  M
  GCGTCGCCGC CAGCGCAAGG CTCCAGGTTG CTGCTGCTGT CGCTGCTCCT GCTAGGGACG
  GTCCCAGGCC CGCGCCCGGG AAGCGCCTTC TACCTGCCCG GCCTGGCGCC GGTCAACTTC
  TGCGCCGAAG AGAAGAGCAA CGAGTGCAAG GTGGGGGAGG CCTGTCGGGC TGCGCGCCGC
  GGTGGGAGCG GGGTCTAGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss392814906	MGP_WTSI_14_122506507	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs245671117					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392814906	MGP_WTSI_14_122506507	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122344697 () rs orientation: forward

Symbol	Name	Function Class
A330035P11Rik	RIKEN cDNA A330035P11 gene	311 bp upstream
Cpgi6887	CpG island 6887	1785 bp distal
Cpgi6888	CpG island 6888	within coordinates
Gm56752	predicted gene, 56752	351 bp downstream
Rr296792	regulatory region 296792	within coordinates
Tm9sf2	transmembrane 9 superfamily member 2	within coordinates
Tssr127315	transcription start site region 127315	241 bp downstream
Tssr127316	transcription start site region 127316	215 bp downstream
Tssr127317	transcription start site region 127317	169 bp downstream
Tssr127318	transcription start site region 127318	113 bp downstream
Tssr130316	transcription start site region 130316	1444 bp upstream
Tssr130317	transcription start site region 130317	358 bp upstream
Tssr130318	transcription start site region 130318	296 bp upstream