rs245672028 SNP Detail

Summary

• ID
  rs245672028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129143732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAACTTTC ATTAAGACCT
  GTACTATCCA AACCTCTTCA TCTCCCCCTT TTACCCCCTT CCTTTGGTTA TTCTACCTCC
  AAATGACTAC ACAGTCCTCT TCCTGTCTAC ATGGTCACCG TATTCTTCTA CTGTGCTTCT
  TCTCTAACTT CCCAGCTGAG CTCTCTGCTC TCTCTAGTGC TTTTGTTCTG GACTATTGTC
  Y
  ATTTAAGAAA TATAAATGGC ACCAGCACCC TGCACCCTCT GAAAGCCTTT GGTGGCTTTC
  AACTGTATAC CAAATGACCA GGACCAAAAG CGCTCCGCTG TTACTTGCAG CTGGCCTGTG
  GGCTCATGAA GCTCTAGGGA ACTCAGGTCT TTATAGTGAA CTGAGATCCT TCTGTTGGGA
  TGTCCCATCC CTACCTTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355636703	MGP_WTSI_2_129127548	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245672028					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355636703	MGP_WTSI_2_129127548	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129143732 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	within coordinates
Rr564905	regulatory region 564905	1251 bp distal
Tssr20111	transcription start site region 20111	1368 bp downstream
Tssr26199	transcription start site region 26199	1995 bp upstream
Tssr26200	transcription start site region 26200	1944 bp upstream
Tssr26201	transcription start site region 26201	1825 bp upstream
Tssr26202	transcription start site region 26202	1762 bp upstream
Tssr26203	transcription start site region 26203	1740 bp upstream
Tssr26204	transcription start site region 26204	1635 bp upstream
Tssr26205	transcription start site region 26205	1582 bp upstream
Tssr26206	transcription start site region 26206	1550 bp upstream
Tssr26207	transcription start site region 26207	1472 bp upstream
Tssr26208	transcription start site region 26208	1244 bp upstream
Tssr26209	transcription start site region 26209	1163 bp upstream
Tssr26210	transcription start site region 26210	1046 bp upstream
Tssr26211	transcription start site region 26211	909 bp upstream
Tssr26212	transcription start site region 26212	866 bp upstream
Tssr26213	transcription start site region 26213	263 bp upstream
Tssr26214	transcription start site region 26214	1143 bp downstream
Tssr26215	transcription start site region 26215	1166 bp downstream
Tssr26216	transcription start site region 26216	1952 bp downstream
Tssr26217	transcription start site region 26217	1982 bp downstream