rs245677100 SNP Detail

Summary

• ID
  rs245677100
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17694391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCTCAAGT CCTGCATCGT GTGGTCGTGG
  ACCTATCTGT GGACCGTGTG GTTCTTCCTC GTGCTCTTCC TGGTCTACAT CCTGAGGGTG
  CCCCTGAGGA TCAACGACAA CCTGAGCACA GGTCAggccc ggcccggccc ggcccggctc
  S
  gctcggccGC CCCTCCCCCG CCCCGGGAAA GTTAGTGCAA AGTcgcgcgg cggggtcgcg
  gccggcgggg acgcgcgctc cgggacgcgc cgccTCAGGT GGCCGCCGCA GCCCCGCGGC
  CTTCGCGAGT CCCACCCCCA CCCCCGCGCG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321756057	CHEV_6_17644392	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245677100					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17694391 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	within coordinates
Gm55211	predicted gene, 55211	835 bp downstream
Gm55212	predicted gene, 55212	347 bp downstream
Gm55213	predicted gene, 55213	510 bp upstream
Gm55215	predicted gene, 55215	962 bp upstream
Rr626833	regulatory region 626833	1448 bp distal
Rr626834	regulatory region 626834	215 bp distal
Rr626835	regulatory region 626835	152 bp proximal
Rr626836	regulatory region 626836	323 bp proximal
Rr626837	regulatory region 626837	1896 bp proximal
St7	suppression of tumorigenicity 7	within coordinates
Tssr55085	transcription start site region 55085	774 bp downstream
Tssr55086	transcription start site region 55086	455 bp downstream
Tssr55087	transcription start site region 55087	403 bp downstream
Tssr55088	transcription start site region 55088	367 bp downstream
Tssr55089	transcription start site region 55089	301 bp downstream
Tssr55090	transcription start site region 55090	213 bp downstream
Tssr59909	transcription start site region 59909	303 bp downstream