rs245685530 SNP Detail

Summary

• ID
  rs245685530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:149202320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTTTGGG GTTTCCTTCT
  CTCACTTGAA GGATGATGTC AGGTGTGTTT GCAGAGGATG GAGAGCAACC TGAAGGGCTG
  GTGAGAAACT TGGCCCAAGT GTCTTGGTGG AGCAAGGGCA TGAAGGGTGG AAGAGGAGGG
  CCAGCCTGGA GAGAGTGTGG GGGTCTGTGC TCCCTTGGAC ACCCGCCTGA ATGAGCCAAT
  Y
  TGCAGCAGGA CCCAGGTCGT CTGTCGTCTG TGTCAGGCAA GGGGTAGTCT TGCGAGCTAT
  AAAGGAGAAA GTCTTTATCA TCTTTTTACT TCTGTACTTA AATAAGTTCT TTTGAAGAAA
  CATCAAAGAA CAATGCGTAA GGCTATTTTT AGTTTTGTTT TGTTTTGTGG TCCTGGGGAT
  AGAACTCAGG GCCCTGCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321720213	CHEV_5_150077086	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245685530					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149202320 () rs orientation: forward

Symbol	Name	Function Class
Alox5ap	arachidonate 5-lipoxygenase activating protein	within coordinates
Rr124816	regulatory region 124816	within coordinates
Rr124817	regulatory region 124817	1080 bp proximal
Tssr49889	transcription start site region 49889	452 bp downstream
Tssr49890	transcription start site region 49890	422 bp downstream
Tssr54633	transcription start site region 54633	1537 bp downstream