rs245687364 SNP Detail

Summary

• ID
  rs245687364
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4006352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCTCTAGG AGTGGGGCAT AAGAATTTCA
  GCACACAGTG GGTGGGCTAG GAAGAGAAGG CACAATTTTG AAGGCCTGAA ATCTCAACTG
  TGGCTCCTTC AAAGATGGTC ACACAACTTT CAGGACAATG GAAACTTAGT GAGAGGACTT
  R
  CATGATCTTA CTTTTCTTTA CTAATATGTT TTCATGCTAT TTATCATTTT TTATGCTTTC
  CTATCTGGGG GAATTTTGTG ATCTCAGCAT TTTGAGCTAA TTTGCTCCAG TCTGAGCCTG
  AGCCCCAGCA ATGGTGAACA AGGTTGCTTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323873015	CHEV_12_3956352	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245687364					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4006352 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4369	CpG island 4369	1388 bp distal
Pomc	pro-opiomelanocortin-alpha	within coordinates
Rr366691	regulatory region 366691	1320 bp downstream
Rr462232	regulatory region 462232	634 bp distal
Rr462233	regulatory region 462233	102 bp proximal
Rr462234	regulatory region 462234	186 bp proximal
Tssr112541	transcription start site region 112541	1395 bp downstream