ATGAAGGAAC AGGGGTAGAG GAGGAAGCCT CATGGTATCC AGGTCGTGGT CCTCTGGAGT TTTTGAATCA ATTAAAGCAA ATAATGCCTG TGTTTTCCAC TAGGCCTAGA CTAGCGATTG GCGGAGACCG GTCCCGTGAC CATGAATTCC CTGCAATTTC GGCGGAGTCC TGGGTTTAAT AGAGAGAGTC CCCATACGCT W GTATTTATCA GCAATATACA ATTATAAAGG CCTAAATTTA AAAAAAAAAG AGAGAGAGCG AAATCTCCCC CCCCCCGCGA AATTGCTCCA TTGCATAAAC CTGGGGGGGG CGGGAGAGGG GGGTCCCTCT GATTCTCCCT CCTGACGCCC CCCCCAGCAG GCCCCCTCCC CCACCATTGA AAGCCATGAA TTTTGAATTT W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss384367034 | MGP_WTSI_11_96212939 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | A | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs245698969 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | A | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss384367034 | MGP_WTSI_11_96212939 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/T |
Location: Chr11:96242451 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi3656 | CpG island 3656 | 387 bp proximal | ||||||
Cpgi3657 | CpG island 3657 | 1043 bp proximal | ||||||
Hoxb2 | homeobox B2 | 7 bp upstream | ||||||
Hoxb3os | homeobox B3 and homeobox B2, opposite strand | within coordinates | ||||||
Rr141 | regulatory region 141 | 1177 bp distal | ||||||
Rr454 | regulatory region 454 | 1405 bp distal | ||||||
Rr455383 | regulatory region 455383 | 1550 bp distal | ||||||
Rr455384 | regulatory region 455384 | 1157 bp distal | ||||||
Rr455385 | regulatory region 455385 | within coordinates | ||||||
Tssr104519 | transcription start site region 104519 | within coordinates | ||||||
Tssr104520 | transcription start site region 104520 | 244 bp upstream | ||||||
Tssr104521 | transcription start site region 104521 | 273 bp upstream | ||||||
Tssr104522 | transcription start site region 104522 | 325 bp upstream | ||||||
Tssr104523 | transcription start site region 104523 | 349 bp upstream | ||||||
Tssr104524 | transcription start site region 104524 | 429 bp upstream | ||||||
Tssr104525 | transcription start site region 104525 | 495 bp upstream | ||||||
Tssr104526 | transcription start site region 104526 | 1239 bp upstream | ||||||
Tssr104527 | transcription start site region 104527 | 1261 bp upstream | ||||||
Tssr104528 | transcription start site region 104528 | 1450 bp upstream | ||||||
Tssr104529 | transcription start site region 104529 | 1502 bp upstream | ||||||
Tssr104530 | transcription start site region 104530 | 1530 bp upstream | ||||||
Tssr104531 | transcription start site region 104531 | 1699 bp upstream | ||||||
Tssr110331 | transcription start site region 110331 | 1498 bp upstream | ||||||
Tssr110332 | transcription start site region 110332 | 1426 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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