rs245703354 SNP Detail

Summary

• ID
  rs245703354
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:52222601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT TCTTTTCTTC GATCTGCGGT
  T
  CTGCTGCCTG CTCAGTCCCT ACCGA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324626441	CHEV_14_52604819	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245703354					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52222601 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgef40	Rho guanine nucleotide exchange factor 40			Intron
				Noncoding-Transcript-Variant
Cpgi6430	CpG island 6430			within coordinates
Cpgi6431	CpG island 6431			809 bp proximal
Gm16617	predicted gene, 16617			1281 bp downstream
Gm62631	predicted gene, 62631			1368 bp downstream
Rr491846	regulatory region 491846			1695 bp distal
Rr491847	regulatory region 491847			203 bp distal
Rr491848	regulatory region 491848			within coordinates
Tssr125437	transcription start site region 125437			631 bp downstream
Tssr125438	transcription start site region 125438			606 bp downstream
Tssr125439	transcription start site region 125439			423 bp downstream
Tssr125440	transcription start site region 125440			288 bp downstream
Tssr125441	transcription start site region 125441			236 bp downstream