rs245716047 SNP Detail

Summary

• ID
  rs245716047
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:6004018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAAGACA AACGAGAAAG
  AGCATTTCTA TCAATCTGGT GAAAAGGAAA AAAACTGAGA AGAAGAGCAG TTATTTCCAG
  ATGTTTCAAA AGTGGTGTCT CCAGGATATA GTATAATTTT TACCGAATTT ATCAGTAAAG
  AAAATTTCAA AGGGAAAAAA AGGAAGACTA TCATAGAATG AGCAGGATAG TTTTTAAAGG
  R
  ATTAGTATGT CTTGTGTTGA CAGCTCCTTG GAGAAGGGTT GTTTGAAGCT GGATGGGGTT
  TTAATTGATC AAAACAATAA TGGCATGTGT GTTGTGTGTT TGTTGTATGA TTGCATGTGT
  GCCCATATCC TCAGCTCTGT GCGCTTAGAT GAACTATTGA CTGAGTGAGA AAGAATACAA
  AGAATCACCT CTTTAAATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321730879	CHEV_6_5954018	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245716047					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:6004018 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17134	CpG island 17134	1642 bp proximal
Dync1i1	dynein cytoplasmic 1 intermediate chain 1	Intron
Rr407096	regulatory region 407096	1977 bp proximal
Rr626191	regulatory region 626191	1628 bp distal
Rr626192	regulatory region 626192	785 bp proximal
Rr626193	regulatory region 626193	1800 bp proximal