rs245719204 SNP Detail

Summary

• ID
  rs245719204
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108143805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAC TGGACATTTA TAAACAGAAA
  W
  GGAACAGAAA CCCTCATTGC TAGAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324152840	CHEV_12_109415756	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245719204					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108143805 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5076	CpG island 5076	690 bp proximal
Rr403488	regulatory region 403488	1783 bp upstream
Setd3	SET domain containing 3	within coordinates
Tssr114948	transcription start site region 114948	937 bp upstream
Tssr114949	transcription start site region 114949	1305 bp upstream
Tssr114950	transcription start site region 114950	1587 bp upstream
Tssr114951	transcription start site region 114951	1590 bp upstream
Tssr114952	transcription start site region 114952	1997 bp upstream
Tssr117676	transcription start site region 117676	1664 bp downstream
Tssr117677	transcription start site region 117677	1691 bp downstream