rs245720563 SNP Detail

Summary

• ID
  rs245720563
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:88997696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGGGAG GGGACAATAG
  GTCCAAACCA CCGAGGCCAA GAACTTCCCT AGCGGAGGAA TTCCACAGAG GGTGTGACTC
  CAGGTCCCTA ACAATGGACC TCTTAAGCTG GGCAGACCAG GTGGAGCCCG CTGTGCAGCG
  AGGGGAGCAG TCACGCTCCT CACCCCCAGC AAGGCCAGGC TCCCCGGGAC TAATGAGCCC
  R
  CTAGGAGCCT GCACCTAGCC AGGCACCCCC AGATAAAGGT TGGCCCAGTA CTGGAAGGAC
  AGCGAGCCGA GGCGCGGCCC GCGGGGCTGG CCCGGGTCCG TCTTACGTTG CCTGGGCGGA
  GGTGGTGGCC TTCTGGTCCA GCGAGGGGCG GTCGGCGGAC ACGGTGGTGT TGGCAGCGGG
  GGGGCGGGAA CCTGGCGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358806294	MGP_WTSI_3_88894311	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245720563					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358806294	MGP_WTSI_3_88894311	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88997696 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13396	CpG island 13396			within coordinates
Gm65858	predicted gene, 65858			256 bp downstream
Rr397780	regulatory region 397780			172 bp downstream
Rr579942	regulatory region 579942			1597 bp distal
Rr579943	regulatory region 579943			within coordinates
Rr579944	regulatory region 579944			448 bp proximal
Rusc1	RUN and SH3 domain containing 1			Intron
				mRNA-UTR
Tssr30034	transcription start site region 30034			1585 bp downstream
Tssr34080	transcription start site region 34080			720 bp upstream
Tssr34081	transcription start site region 34081			673 bp upstream
Tssr34082	transcription start site region 34082			630 bp upstream
Tssr34083	transcription start site region 34083			519 bp upstream
Tssr34084	transcription start site region 34084			381 bp upstream
Tssr34085	transcription start site region 34085			1141 bp downstream