rs245725908 SNP Detail

Summary

• ID
  rs245725908
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:82223820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATT CCACCTCTCA TCCCACCCAG
  Y
  AACGCTGGCC TCATTACATA TTGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325034249	CHEV_15_82170049	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245725908					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82223820 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi7419	CpG island 7419			288 bp distal
Cpgi7420	CpG island 7420			1122 bp proximal
Naga	N-acetyl galactosaminidase, alpha			837 bp upstream
Pheta2	PH domain containing endocytic trafficking adaptor 2			Intron
				Noncoding-Transcript-Variant
Rr506479	regulatory region 506479			650 bp distal
Rr506480	regulatory region 506480			252 bp distal
Rr506481	regulatory region 506481			494 bp distal
Rr506482	regulatory region 506482			749 bp proximal
Rr506483	regulatory region 506483			1571 bp proximal
Tssr4669	transcription start site region 4669			744 bp upstream
Tssr132381	transcription start site region 132381			1580 bp upstream
Tssr135543	transcription start site region 135543			828 bp upstream
Tssr135544	transcription start site region 135544			765 bp upstream
Tssr135545	transcription start site region 135545			755 bp upstream