rs245733844 SNP Detail

Summary

• ID
  rs245733844
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90982237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTAGGGACA GTGGATGAGG
  ACGACGGTGA TTGAAAATTG GGCACCGGGG AGTTGGGGGA TTTTTGGTTG TTACAGCCTG
  TGTAGTTTAT AGTTTTGGGG TCTGGGAGTT CAGGCAGGAT CCATAACCCA AACTAGCCTT
  GCTCTCAGGA TTCTCATGTC TCAACCCTTC CACTATCGGG CTTACAAGCC TGCATCACCC
  A
  CCCACCCCCC CCACCCCCGC GCGCCTTATC CATGGCTGTG GTTGCTTATT AGTGGGAATA
  TTTCAAAGTA AATTGTACTC TGTGAAACCA TGTATTTTAT GGAGTTGATA CCAGAGAGAG
  GGGGAGACCC AAGGTTCCCA TTTTAGCAGG CTTTTGTGAG ACCTTGATAA AAACTGAGCC
  TCAGCCACTC ATTCTCCAGG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cJ	C57BL/6J	C57BL/6NJ	C58/J	CE/J	DBA/2J	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	RIIIS/J
ss350468185	MGP_WTSI_1_92951092	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cJ	C57BL/6J	C57BL/6NJ	C58/J	CE/J	DBA/2J	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	RIIIS/J
rs245733844					SNP	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350468185	MGP_WTSI_1_92951092	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90982237 () rs orientation: forward

Symbol	Name	Function Class
Cpgi568	CpG island 568	787 bp distal
Lrrfip1	leucine rich repeat (in FLII) interacting protein 1	within coordinates
Rr29813	regulatory region 29813	within coordinates
Rr396168	regulatory region 396168	1453 bp downstream
Tssr8032	transcription start site region 8032	1323 bp downstream
Tssr8033	transcription start site region 8033	995 bp downstream
Tssr8034	transcription start site region 8034	983 bp downstream
Tssr8035	transcription start site region 8035	965 bp downstream
Tssr8036	transcription start site region 8036	953 bp downstream
Tssr8037	transcription start site region 8037	523 bp downstream
Tssr12924	transcription start site region 12924	1687 bp upstream
Tssr12925	transcription start site region 12925	1669 bp upstream
Tssr12926	transcription start site region 12926	1643 bp upstream
Tssr12927	transcription start site region 12927	1617 bp upstream
Tssr12928	transcription start site region 12928	1467 bp upstream
Tssr12929	transcription start site region 12929	665 bp upstream
Tssr12930	transcription start site region 12930	1977 bp downstream