rs245742642 SNP Detail

Summary

• ID
  rs245742642
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141463548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAAGGTG GGGTTAGGAA
  GCAGCTGCGC TCTCTCTGTC TCTCGCTCTC TGTGTCTCTC TGTCTCTGTC TCTGTCTCTC
  TCTGCGGGTG GGGGACGGGG GTGGGGAGGG AAAGAGGTCA GGAGAATCTT CTTTTCCTCC
  ACCAAGTCTA TCACTGAAGG TTCGCTGTGG TCGGAAGGGG GCGGAGAGGA AGAAGGACGG
  V
  AGGAGGGAAG GAGGGAGAGA GCCAGCAAGG TTTGTGTAGG GTGGGGGGAG GGGGGAGAGA
  GAGAAAAGCA TCAGAGCTGG GTTAGAAGGA GTCCGAGGAG AAATCCTCAA ATTTAGGCAC
  TCAAGAAGAA AGTGAGGCTG TGACAAGAAG GTGAGCAATA CTTTTATGGT CTTTTTTTTT
  TTTTTTTTTT GAATCTCCCA                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404780363	MGP_WTSI_X_139115095	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245742642					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404780363	MGP_WTSI_X_139115095	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141463548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22978	CpG island 22978	571 bp proximal
Rr694097	regulatory region 694097	1571 bp distal
Rr694098	regulatory region 694098	371 bp distal
Rr694099	regulatory region 694099	13 bp distal
Rr694100	regulatory region 694100	364 bp proximal
Tmem164	transmembrane protein 164	854 bp upstream
Tssr162238	transcription start site region 162238	258 bp upstream
Tssr162239	transcription start site region 162239	846 bp upstream
Tssr162240	transcription start site region 162240	1299 bp upstream
Tssr162241	transcription start site region 162241	1331 bp upstream