rs245764401 SNP Detail

Summary

• ID
  rs245764401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:34153034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAATATT GAGAGATTTA
  GCATCAGTGT CCAGGAAGGT CGCCTCTGGG ACCCAGATAA GTCCCACTCC CCCGCCCCCG
  TGTCTCGAAA ACAGTGAGGA AAATCCTCTC TAGCCTGACC CTCTCCTTCT CAGTCCCCTT
  GTGCTGACAA CCCTGGCTGT TTGATTACCC TACTCCCAGG TTCCATTTGC GAGACAGGCC
  Y
  CTTCAGTCTC TAGGTGACCT TAGCCGTTCT GCTGGCTCCA ACAATGGTGC GGCATAACGC
  AGACTGAGGG TCCTCCGGCC CGGAGAGGGT CTCCGCGAGC ACGAGGATGA TTCGGCTTTG
  GGGGTGCCCA TTCCCGTGAC CTAGGAAAGT GGATATGCCA CTACGCATTC CCCACTCCAT
  GCGCGCCCTG TCTGCTGCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364490755	MGP_WTSI_5_34338339	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245764401					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364490755	MGP_WTSI_5_34338339	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:34153034 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15746	CpG island 15746	within coordinates
Nat8l	N-acetyltransferase 8-like	294 bp upstream
Rr609648	regulatory region 609648	837 bp distal
Rr609649	regulatory region 609649	within coordinates
Tssr1458	transcription start site region 1458	1093 bp upstream
Tssr45846	transcription start site region 45846	319 bp upstream
Tssr45847	transcription start site region 45847	358 bp upstream
Tssr45848	transcription start site region 45848	404 bp upstream
Tssr45849	transcription start site region 45849	429 bp upstream
Tssr45850	transcription start site region 45850	720 bp upstream
Tssr45851	transcription start site region 45851	895 bp upstream
Tssr45852	transcription start site region 45852	919 bp upstream
Tssr45853	transcription start site region 45853	949 bp upstream
Tssr45854	transcription start site region 45854	1008 bp upstream
Tssr45855	transcription start site region 45855	1041 bp upstream
Tssr45856	transcription start site region 45856	1058 bp upstream
Tssr45857	transcription start site region 45857	1080 bp upstream
Tssr50625	transcription start site region 50625	846 bp downstream
Tssr50626	transcription start site region 50626	1891 bp downstream