rs245777469 SNP Detail

Summary

• ID
  rs245777469
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:9812326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGAGAT GGAGAGGCAG
  GGTCAGCCCA CCAGTGCTAA GGGAAGGTGG GGGGAGGGAT GCAGTCTGCA GTGCTCACAG
  CCCCCTTATG CACCCTGGGG GCTCGACCAG AGAGGGAGCT GGAGCTTGGT GCCTATGACA
  CCCTCGGTGC GGGTCTTCAC TTCCTGTGGC TGATAACCAG AGCTCCTTTC AGGGACGCAC
  S
  GGAGAGTGGA AGCCCCAGGT TGGCCACCCA CGAGAAGCTT AGTGGGAACC TCCACCCTCA
  CCCCCTACCA CCACCTCGGC GCCCGGCTAC TGGGAGTTGT GCGACCAGGA GCTGCTGAGC
  CTGGGGTGGG GGGTGGGGGG CAGGAAAGGA GGGGGCGCTG GCTGAGTTTG CTATGAGCCG
  GGAGGAGAAG AGGGGGAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395370675	MGP_WTSI_16_9994555	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245777469					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395370675	MGP_WTSI_16_9994555	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:9812326 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi7945	CpG island 7945			within coordinates
Grin2a	glutamate receptor, ionotropic, NMDA2A (epsilon 1)			Intron
				mRNA-UTR
Rr511422	regulatory region 511422			1439 bp distal
Rr511423	regulatory region 511423			553 bp distal
Rr511424	regulatory region 511424			within coordinates
Rr511425	regulatory region 511425			110 bp proximal
Rr511426	regulatory region 511426			1038 bp proximal
Tssr139893	transcription start site region 139893			85 bp downstream
Tssr139894	transcription start site region 139894			538 bp downstream
Tssr139895	transcription start site region 139895			582 bp downstream
Tssr139896	transcription start site region 139896			837 bp downstream
Tssr139897	transcription start site region 139897			853 bp downstream
Tssr139898	transcription start site region 139898			886 bp downstream
Tssr139899	transcription start site region 139899			916 bp downstream
Tssr139900	transcription start site region 139900			950 bp downstream
Tssr139901	transcription start site region 139901			1046 bp downstream
Tssr139902	transcription start site region 139902			1064 bp downstream
Tssr139903	transcription start site region 139903			1100 bp downstream
Tssr139904	transcription start site region 139904			1166 bp downstream
Tssr139905	transcription start site region 139905			1239 bp downstream
Tssr139906	transcription start site region 139906			1344 bp downstream