rs245790415 SNP Detail

Summary

• ID
  rs245790415
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98330851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTGTTGG GTCGGTCTGT
  GTTTGCTGAG TTCTGACGTC ATCCCATCTA GTTATAGGAT ATTTCAATGG ATCTAAGAAG
  GCCTTTCCTG TTTGCTTGCA GCTTCCAACT CCAGCCCCAA GCAATCGCTG CTCTGCTCTC
  TAAACTTTTC TGGACATTTC ACATAAATGG ACTCTTGCAG CATGTGACGT TTGCTCTGTT
  K
  TATCAGAGCA AGCCTCCATC CAGTGCTGTG TCCCAGGCGT TCCTTTCTAT TGATGAATAC
  TATTTCATTC TGTTGTATAG AAAAAGCACA GATTATTTGT CTATTAACAT TAATCTGGGT
  TTCTTTGGGT TGTTTGTTTT GAGTAAATGT CTTGTAGATG CCTTTGTATG GATGTGTTGC
  CATTTCTCTT AAGTTCCTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384412117	MGP_WTSI_11_98301339	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245790415					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384412117	MGP_WTSI_11_98301339	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98330851 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3758	CpG island 3758	830 bp distal
Gm12352	predicted gene 12352	979 bp downstream
Gm72451	predicted gene, 72451	within coordinates
Mien1	migration and invasion enhancer 1	1034 bp upstream
Rr402936	regulatory region 402936	809 bp downstream
Rr456150	regulatory region 456150	1978 bp distal
Rr456151	regulatory region 456151	1630 bp distal
Rr456152	regulatory region 456152	1105 bp distal
Rr456153	regulatory region 456153	670 bp distal
Rr456154	regulatory region 456154	958 bp distal
Rr456155	regulatory region 456155	1888 bp proximal
Tssr110536	transcription start site region 110536	1249 bp upstream
Tssr110537	transcription start site region 110537	1017 bp upstream