About   Help   FAQ
rs245792049 SNP Detail
Summary
  • ID
    rs245792049
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:94842810 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AACTTAGTTT TTACCTTTGA
CCAACTGAAC GTGACCAAAA ACCAAAAGTG CATTCAACCT TACCAAAAAA GAAAAAAAAA
AAAAGAATAA ATAAATAACT TTTTAAAAAA GGAAGCTTGG TCCTCTTGCT TGAAGACCTA
TGTGGGTATA AGTCCCTTCC TGCCCACTTG GCTTATGATA CCCTAATGCT GCCTTTTCTG
Y
TCCTTTCTCC ACCCCCTCTT GGGGCCTCTC CTCCATTGCT CCCCAAATTT AAGTCTCCCC
CAAGACACAG GAAATAATGC ATTGTCTGCC CAGCAAACAA AGGCAATGCT GAAATGTCCC
ACCAGCCCCT CAACCCCGTC TACTTCCCTA CCCAGCACCC TCAAATCCTG CTGGGACATG
GGGTTCTTGG ACTGTTGAAG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384336274 MGP_WTSI_11_94813298 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245792049 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss384336274 MGP_WTSI_11_94813298 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:94842810 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a1 collagen, type I, alpha 1 within coordinates
D11Lis1 DNA segment, Chr 11, Lisse 1 1334 bp proximal
Rr454892 regulatory region 454892 72 bp proximal
Tssr3647 transcription start site region 3647 within coordinates
Tssr104262 transcription start site region 104262 1810 bp downstream
Tssr104263 transcription start site region 104263 1677 bp downstream
Tssr104264 transcription start site region 104264 1655 bp downstream
Tssr104265 transcription start site region 104265 1629 bp downstream
Tssr104266 transcription start site region 104266 1617 bp downstream
Tssr104267 transcription start site region 104267 1550 bp downstream
Tssr104268 transcription start site region 104268 1522 bp downstream
Tssr104269 transcription start site region 104269 1509 bp downstream
Tssr104270 transcription start site region 104270 1488 bp downstream
Tssr104271 transcription start site region 104271 1434 bp downstream
Tssr104272 transcription start site region 104272 1240 bp downstream
Tssr104273 transcription start site region 104273 1146 bp downstream
Tssr104274 transcription start site region 104274 1128 bp downstream
Tssr104275 transcription start site region 104275 1119 bp downstream
Tssr104276 transcription start site region 104276 1108 bp downstream
Tssr104277 transcription start site region 104277 834 bp downstream
Tssr104278 transcription start site region 104278 813 bp downstream
Tssr104279 transcription start site region 104279 756 bp downstream
Tssr104280 transcription start site region 104280 744 bp downstream
Tssr104281 transcription start site region 104281 730 bp downstream
Tssr104282 transcription start site region 104282 660 bp downstream
Tssr104283 transcription start site region 104283 507 bp downstream
Tssr104284 transcription start site region 104284 447 bp downstream
Tssr104285 transcription start site region 104285 417 bp downstream
Tssr104286 transcription start site region 104286 384 bp downstream
Tssr104287 transcription start site region 104287 360 bp downstream
Tssr104288 transcription start site region 104288 320 bp downstream
Tssr104289 transcription start site region 104289 312 bp downstream
Tssr104290 transcription start site region 104290 264 bp downstream
Tssr104291 transcription start site region 104291 249 bp downstream
Tssr104292 transcription start site region 104292 152 bp downstream
Tssr104293 transcription start site region 104293 45 bp downstream
Tssr104294 transcription start site region 104294 11 bp downstream
Tssr104295 transcription start site region 104295 19 bp upstream
Tssr104296 transcription start site region 104296 38 bp upstream
Tssr104297 transcription start site region 104297 71 bp upstream
Tssr104298 transcription start site region 104298 109 bp upstream
Tssr104299 transcription start site region 104299 137 bp upstream
Tssr104300 transcription start site region 104300 157 bp upstream
Tssr104301 transcription start site region 104301 281 bp upstream
Tssr104302 transcription start site region 104302 293 bp upstream
Tssr104303 transcription start site region 104303 307 bp upstream
Tssr104304 transcription start site region 104304 346 bp upstream
Tssr104305 transcription start site region 104305 371 bp upstream
Tssr104306 transcription start site region 104306 386 bp upstream
Tssr104307 transcription start site region 104307 402 bp upstream
Tssr104308 transcription start site region 104308 472 bp upstream
Tssr104309 transcription start site region 104309 492 bp upstream
Tssr104310 transcription start site region 104310 537 bp upstream
Tssr104311 transcription start site region 104311 633 bp upstream
Tssr104312 transcription start site region 104312 703 bp upstream
Tssr104313 transcription start site region 104313 719 bp upstream
Tssr104314 transcription start site region 104314 1135 bp upstream
Tssr110222 transcription start site region 110222 1086 bp upstream
Tssr110223 transcription start site region 110223 727 bp upstream
Tssr110224 transcription start site region 110224 663 bp upstream
Tssr110225 transcription start site region 110225 447 bp upstream
Tssr110226 transcription start site region 110226 407 bp upstream
Tssr110227 transcription start site region 110227 394 bp upstream
Tssr110228 transcription start site region 110228 334 bp upstream
Tssr110229 transcription start site region 110229 314 bp upstream
Tssr110230 transcription start site region 110230 277 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory