rs245800674 SNP Detail

Summary

• ID
  rs245800674
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101900063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGCTGC CGTCAGCACC
  CCGGGAAAAG ACGTGATCAG CAGAGATGCA GGCGGAGCCG CGCGGGCCCC CAAAACAGGA
  TGTCGTGTCG TGGTTCCGCA CCTCGCAGCT CCGCGGGGCC CTGGGGAGGG GGCGGGGCGT
  GGGAAGACGT GGGGCTCTTC TTGTTCCCTG ATCTCGCCCT GGCGCGCGGC TGTTTGGAGC
  K
  GTAGGACCGC GCCCAGGCCT GAGGTCCGGC TTGGGCCCTG GAGACCGGCG AGTGGACGGC
  CTCGAGGGCG CCCTCTGGTG CTTCTAACCC AGGCCTTGGG CGCAGTTTTC CTGGAGAATC
  CACAGTCTTG ATTCTTTTAA CAACTTTCTG GGTGCTCTAC CACGTGCAGA GCTCCGCAAG
  GTACAGTGAA AACAACACAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372554844	MGP_WTSI_7_109399370	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245800674					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372554844	MGP_WTSI_7_109399370	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101900063 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	within coordinates
Rhog	ras homolog family member G	738 bp upstream
Rr652562	regulatory region 652562	779 bp distal
Rr652563	regulatory region 652563	243 bp distal
Rr652564	regulatory region 652564	65 bp proximal
Tssr2354	transcription start site region 2354	580 bp downstream
Tssr68328	transcription start site region 68328	1163 bp downstream
Tssr68329	transcription start site region 68329	1142 bp downstream
Tssr68330	transcription start site region 68330	601 bp downstream
Tssr73939	transcription start site region 73939	1482 bp upstream
Tssr73940	transcription start site region 73940	1435 bp upstream
Tssr73941	transcription start site region 73941	1382 bp upstream
Tssr73942	transcription start site region 73942	1297 bp upstream
Tssr73943	transcription start site region 73943	770 bp upstream
Tssr73944	transcription start site region 73944	733 bp upstream
Tssr73945	transcription start site region 73945	718 bp upstream
Tssr73946	transcription start site region 73946	522 bp upstream
Tssr73947	transcription start site region 73947	377 bp upstream
Tssr73948	transcription start site region 73948	341 bp upstream
Tssr73949	transcription start site region 73949	308 bp upstream
Tssr73950	transcription start site region 73950	261 bp upstream