rs245802461 SNP Detail

Summary

• ID
  rs245802461
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46384206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGCA TGCGCAGTCT AGTCGCCGGT
  T
  CTGGGCATCC AGGGAGCCGC CCGAC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325822474	CHEV_19_46470257	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245802461					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46384206 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	26 bp upstream
Cpgi11001	CpG island 11001	within coordinates
Cpgi11002	CpG island 11002	923 bp proximal
Gm59146	predicted gene, 59146	within coordinates
Rr405999	regulatory region 405999	427 bp downstream
Rr406000	regulatory region 406000	within coordinates
Rr406001	regulatory region 406001	859 bp upstream
Rr548727	regulatory region 548727	664 bp distal
Rr548728	regulatory region 548728	40 bp distal
Rr548729	regulatory region 548729	within coordinates
Rr548730	regulatory region 548730	639 bp proximal
Rr548731	regulatory region 548731	974 bp proximal
Rr548732	regulatory region 548732	1082 bp proximal
Rr548733	regulatory region 548733	1794 bp proximal
Rr548734	regulatory region 548734	1836 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	1129 bp upstream
Tssr156751	transcription start site region 156751	402 bp downstream
Tssr156752	transcription start site region 156752	374 bp downstream
Tssr156753	transcription start site region 156753	1118 bp upstream
Tssr156754	transcription start site region 156754	1242 bp upstream
Tssr159650	transcription start site region 159650	11 bp upstream