rs245803163 SNP Detail

Summary

• ID
  rs245803163
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18914974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAATCATG CTAGGAAGTG
  TAGCTATTCT ATTCAGTTTT TGAAATGAGG AACCCGAGGT AGAAGTTGGG CAACTTGTTC
  ATACTTTGAA AAAGAGGCAG AACTGGGGAG ATCTGATCTC AGGCAAGCAC ACCTCTGAGT
  CTGTGCTATC AACCGTCATC TACCCCTCAC CCTATACAAA GAGTCTTGTG TCTAGATTCC
  K
  TGGTCCCGGC AATGGGACTC AGTGACACCT GACGCCTGCA GGGGTCAGCC GCGGGGGGCG
  GGGCAGGGGC GGTGGCGCGG GCGACTCCCA GGGCCGGAAG CGGCGGGGCC GGTCCGGGCT
  CCACCCCGGA CCCGAAGCTC CGCCAGCAGC CGCCATGAGT AGTTTTGGAA TTGGGTGAGA
  CCCTCTTTCA GCACCCCTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370743501	MGP_WTSI_7_19766398	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245803163					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370743501	MGP_WTSI_7_19766398	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18914974 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18452	CpG island 18452	1118 bp distal
Cpgi18453	CpG island 18453	27 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Mir330	microRNA 330	416 bp upstream
Rr643019	regulatory region 643019	1711 bp distal
Rr643020	regulatory region 643020	within coordinates
Rr643021	regulatory region 643021	166 bp proximal
Tssr64797	transcription start site region 64797	113 bp upstream
Tssr64798	transcription start site region 64798	162 bp upstream
Tssr64799	transcription start site region 64799	244 bp upstream
Tssr64800	transcription start site region 64800	358 bp upstream