rs245811168 SNP Detail

Summary

• ID
  rs245811168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56265614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAAGATGA GCAGTAGGGC
  CAGCTCTCTC ACAATGCCCC GGTAAGGGGG TAGAGCCAGT TCCACACAGT CTTCAGACAT
  CAATAGGTAG TAGATCAGAC CAGGGACATC TGCCTGTTCT TTGGTGGTAA CAGATATCTG
  CTGCTGCAGG ACTAGGGATC CAGATGTGGC CCCCAGTGGC AGCATAGGCC AGGAGCCCAC
  Y
  ATGGTCCCAG GTGGCACCAC AGAATACACA TGATGGAGCC AAGCAGGGGG CCATCGTGCA
  TATGGCCTGA TCCACAATGC CTGCACAGTC TCAGGCTAGC TCCCTGTGTG GGCTTCCACA
  GTGCTGGTCT GGTGACTGTC TCAAGCTTGC TCCTAGCCTG GGCCTGGCCC AAGTGGCCCC
  TTGTGACAGT CATTTCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325856840	CHEV_19_56351672	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245811168					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56265614 () rs orientation: forward

Symbol	Name	Function Class
Gm22271	predicted gene, 22271	336 bp downstream
Gm32257	predicted gene, 32257	within coordinates
Rr549993	regulatory region 549993	170 bp proximal
Rr549994	regulatory region 549994	400 bp proximal
Rr549995	regulatory region 549995	820 bp proximal
Rr549996	regulatory region 549996	846 bp proximal
Rr549997	regulatory region 549997	910 bp proximal