rs245816793 SNP Detail

Summary

• ID
  rs245816793
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7503180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACATTTT ACATGTCCAA
  AATCAAACAG GAGTAAATAT TAGAAATGAG ATTCAAACAA CCGAGAGCTA AAACGCAAAC
  AATTGGGAAG TATCTATTAT ATACTTGTGT TTTGTAAATA AATATGGGAG CCAGGCATGG
  TGGCACATGC CTTTAATCCT AGCATTTTGG AGGCAAAGGC AGGCAGATCT CTATAAGTTC
  R
  TGGCCAGCCT GATCTATACA GAGTGAATTC CAGGACAGCC AGGGCTACAG AGAGAAACCC
  TGTCTCAGAA AAATAAAATA AAATAAAATA AAATAAAATA AAATAAAATA AAATAAAAGG
  TACAGGGGCT AGGGAGATAT CTCAGAAGGT AAAAGTGATG GCCAAGCCTG AAGACCTGAG
  ATAGATCCAC AGGACCAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325888087	CHEV_X_7214067	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245816793					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7503180 () rs orientation: forward

Symbol	Name	Function Class
Cacna1f	calcium channel, voltage-dependent, alpha 1F subunit	1745 bp downstream
Cpgi22570	CpG island 22570	1587 bp proximal
Rr689617	regulatory region 689617	1208 bp proximal
Rr689618	regulatory region 689618	1541 bp proximal
Syp	synaptophysin	1639 bp upstream
Tssr160397	transcription start site region 160397	1733 bp upstream