rs245829452 SNP Detail

Summary

• ID
  rs245829452
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149979235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAGAAAT ATACAGACTT
  GTAGCTCTGG TAGACAAATT ATTTTAGAAT TTTGTGGCTA TGAAAAAGTC ACTTATTGAG
  CTAGATTGGT GATTAAGAAC AGTTGTTGCT TTTGCTTAAG TTCTTAACAC CTACATGACA
  GTTCACAACC ACCTATAACT CCAGTCAGTT CTAGGAGATT CCATGTTTTG TAACATTTTA
  R
  GGCACCAGAC AAGCACATGA CATACATACA TACATACATA CATAGAGGCA AATTCTCATA
  CATATAAAAA TAAAATAAAT CTTAAGAAAA TCACGTGGTG AATTTTAAAG ACAACTAAAT
  CATCAATATT GAATAAGAAA TTATAGTAAA AAATCAGTAA ATTGAACTTT CTCCATACTT
  AATTTTCTAG GTGGACTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351888743	MGP_WTSI_1_151950614	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245829452					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351888743	MGP_WTSI_1_151950614	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149979235 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	766 bp proximal
Rr24983	regulatory region 24983	798 bp proximal
Rr31002	regulatory region 31002	1835 bp distal
Tssr242	transcription start site region 242	679 bp downstream
Tssr9230	transcription start site region 9230	1371 bp downstream
Tssr9231	transcription start site region 9231	1338 bp downstream
Tssr9232	transcription start site region 9232	1295 bp downstream
Tssr9233	transcription start site region 9233	839 bp downstream
Tssr9234	transcription start site region 9234	810 bp downstream
Tssr9235	transcription start site region 9235	779 bp downstream
Tssr9236	transcription start site region 9236	754 bp downstream
Tssr9237	transcription start site region 9237	722 bp downstream
Tssr9238	transcription start site region 9238	691 bp downstream
Tssr9239	transcription start site region 9239	657 bp downstream
Tssr9240	transcription start site region 9240	643 bp downstream
Tssr9241	transcription start site region 9241	613 bp downstream
Tssr9242	transcription start site region 9242	597 bp downstream
Tssr9243	transcription start site region 9243	470 bp downstream
Tssr9244	transcription start site region 9244	419 bp downstream
Tssr9245	transcription start site region 9245	383 bp downstream
Tssr9246	transcription start site region 9246	364 bp downstream
Tssr9247	transcription start site region 9247	229 bp downstream
Tssr9248	transcription start site region 9248	181 bp upstream
Tssr9249	transcription start site region 9249	208 bp upstream
Tssr9250	transcription start site region 9250	376 bp upstream
Tssr9251	transcription start site region 9251	422 bp upstream
Tssr9252	transcription start site region 9252	477 bp upstream
Tssr9253	transcription start site region 9253	507 bp upstream
Tssr9254	transcription start site region 9254	534 bp upstream
Tssr9255	transcription start site region 9255	553 bp upstream
Tssr9256	transcription start site region 9256	793 bp upstream
Tssr9257	transcription start site region 9257	817 bp upstream
Tssr9258	transcription start site region 9258	840 bp upstream
Tssr9259	transcription start site region 9259	865 bp upstream
Tssr9260	transcription start site region 9260	920 bp upstream
Tssr9261	transcription start site region 9261	975 bp upstream
Tssr9262	transcription start site region 9262	983 bp upstream
Tssr9263	transcription start site region 9263	1005 bp upstream
Tssr9264	transcription start site region 9264	1050 bp upstream
Tssr9265	transcription start site region 9265	1081 bp upstream
Tssr9266	transcription start site region 9266	1170 bp upstream
Tssr9267	transcription start site region 9267	1461 bp upstream
Tssr9268	transcription start site region 9268	1517 bp upstream
Tssr9269	transcription start site region 9269	1900 bp upstream
Tssr9270	transcription start site region 9270	1940 bp upstream
Tssr9271	transcription start site region 9271	1964 bp upstream
Tssr9272	transcription start site region 9272	1994 bp upstream