rs245833050 SNP Detail

Summary

• ID
  rs245833050
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117728477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAA TAGCCCCAGA GCCCTGGCTT
  R
  CACCTGGTAG TTCTGCCACC TTCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321280638	CHEV_4_117543885	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245833050					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117728477 () rs orientation: forward

Symbol	Name	Function Class
B4galt2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	1734 bp downstream
Ccdc24	coiled-coil domain containing 24	within coordinates
Rr598243	regulatory region 598243	279 bp distal
Rr598244	regulatory region 598244	939 bp proximal
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	1975 bp downstream
Tssr42995	transcription start site region 42995	20 bp downstream
Tssr42996	transcription start site region 42996	44 bp downstream
Tssr42997	transcription start site region 42997	746 bp downstream
Tssr42998	transcription start site region 42998	1268 bp downstream
Tssr42999	transcription start site region 42999	1283 bp downstream
Tssr43000	transcription start site region 43000	1316 bp downstream
Tssr43001	transcription start site region 43001	1464 bp downstream