rs245834680 SNP Detail

Summary

• ID
  rs245834680
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:78072629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGGAGAG GAAAATGGAG
  TTAGCTGCCC TGGTGCCAGC ATTCAACACA TGGTTTACTT TAGAACCAGA CTAGGAAAGA
  ATAGGTGCAT CAGACAATAG ATCACAATCA TCTTTATCAG ACTTTGGTCG CTAAATAATG
  TCATCACATG CACCCAAACC ACTATGGGCT CAACTTCCCA TTTACAGTCA AATCCTGTAT
  W
  TTCTCTTGAC TAAAGAATCA AGTTTAATTT ATGCATTTAT CCACTGGAGT TCCACATTTA
  CTATTATGAG ACCAGATCAA ATAAATAACT ATAGAGAAAA TTGTGCTCAA TTGCTAGAGG
  TTGGCTACAC CCCAAGAGTG TAGTTGAGGC AGGGGCTCAC AATACAGCAC AAGCTAGCCT
  GAAATCCAAG AGCCACACTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383952671	MGP_WTSI_11_77995305	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245834680					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383952671	MGP_WTSI_11_77995305	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78072629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3335	CpG island 3335	1336 bp proximal
Rpl23a	ribosomal protein L23A	Intron
Rr402760	regulatory region 402760	1635 bp upstream
Rr451902	regulatory region 451902	1221 bp proximal
Rr451903	regulatory region 451903	1441 bp proximal
Rr451904	regulatory region 451904	1771 bp proximal
Snord4a	small nucleolar RNA, C/D box 4A	47 bp upstream
Snord42a	small nucleolar RNA, C/D box 42A	457 bp upstream
Snord42b	small nucleolar RNA, C/D box 42B	1256 bp downstream
Tlcd1	TLC domain containing 1	mRNA-UTR
Tssr109378	transcription start site region 109378	1369 bp downstream
Tssr109379	transcription start site region 109379	1748 bp downstream