rs245838471 SNP Detail

Summary

• ID
  rs245838471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13377397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAATAAAT TTCCAGTATC
  ATGACCCTGT ATCTATTTTC ATACTAAATA TGAGAATGAT GTTACCCTAT GAAATTTCCA
  CTGTTATACC TAACAATTTG TCCTTGATAG CTTTGAAAAA GTCATATTGA GGGCTGGAGA
  GATAGCTCAG TGGTTAAGAG CACCGACTGC TCTTCCGAAG GTCCTGAGTT CAAATCCCAG
  Y
  AACCACATGG TGGCTCACAA CCATCTGTAA TGAGATCTGA CGCCTTCTTC TGGTGCATCT
  GAAGACAGCT ACAGTGAACT TAGATATAAT AATAAATGAA TCTTTAAAGA AAAAGAAAAA
  GTCATATTGA GATATAATTT ATTAAATAAT TGGTATAATA ATTAAATTCA CTCATTTAAT
  GTGTGAATTG GGTTTTTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322506194	CHEV_8_13327397	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245838471					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13377397 () rs orientation: forward

Symbol	Name	Function Class
Rr175520	regulatory region 175520	397 bp distal
Rr175521	regulatory region 175521	1404 bp proximal
Rr180371	regulatory region 180371	1397 bp distal
Rr180372	regulatory region 180372	396 bp distal