rs245847299 SNP Detail

Summary

• ID
  rs245847299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87194594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGAGCATT GCGGGAGGCG
  GAGGGAAACC AAGGACTGAC AAACTCGAGT CGGCTCATGA ACTACAACTC CCAGCAGCTC
  AGGGGGCGGG GGCGGGGCCA GCCCGAAGGA GGGAGGCCAT CTAGTCCAAC CTTCGCTCTC
  TGGACCCCGC TAGGCCTCAG TCATCTTCTA GTCCCGAGAG CTGACTTTCT TGGCCGGCCG
  R
  CCGGGCGAGA TGCAAGCCGG GAAGGTCTGT GCCCCACGTC CGGGGATGAG GGTCTCTCCT
  GAGAAACGCG GAGAAGAGCT GTGGGGGGGG GCGGGGCTGA GAGCTCGCTT CTTCGCGTGG
  CGCCACAACG ACTCCCGGCG TGCACCTCGG CGCCCGCTCA CTCTACACCT GCGCGCTGGC
  CGCTGAACCT TATGGTGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss386776134	MGP_WTSI_12_88488770	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs245847299					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386776134	MGP_WTSI_12_88488770	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87194594 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4937	CpG island 4937	within coordinates
Gm6566	predicted gene 6566	1655 bp downstream
Gstz1	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	within coordinates
Pomt2	protein-O-mannosyltransferase 2	within coordinates
Rr403429	regulatory region 403429	540 bp downstream
Rr403430	regulatory region 403430	within coordinates
Rr470321	regulatory region 470321	645 bp distal
Rr470322	regulatory region 470322	696 bp distal
Rr470323	regulatory region 470323	38 bp distal
Rr470324	regulatory region 470324	314 bp distal
Rr470325	regulatory region 470325	72 bp proximal
Tssr114506	transcription start site region 114506	619 bp downstream
Tssr114507	transcription start site region 114507	37 bp downstream
Tssr114508	transcription start site region 114508	28 bp downstream
Tssr114509	transcription start site region 114509	150 bp upstream
Tssr117156	transcription start site region 117156	344 bp upstream
Tssr117157	transcription start site region 117157	325 bp upstream
Tssr117158	transcription start site region 117158	63 bp downstream