rs245853151 SNP Detail

Summary

• ID
  rs245853151
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30826616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCGGGCTC CTGCGCACTG
  CAGCGGCGGC CCGGGAGGGA GGAGGGAGAC GGAGGAGGGA GGAGGGAGCG GGAGGGGGCG
  GGATGAATCA CCGCGGGGGG AGGGCGCGGC CGCCCAGCCT TTGCCGCAGC GGCCCGGGAG
  GCGCCCGGGC ACCGGCCTCT CCGGTGGCTT CGTGGCTTCT GCACACCCGT TGCATGGTCT
  R
  GGTCATTCCG GCTTCACCAG ACTCTCTGGG GGTGTCGGAA CCCTTTCCTC TTCCTCTTCT
  GAGAAAGGTC ATCTCTAGAC ACCCAAGAGG ACTTGGAGGA CAGTTTGAGG GACCAATTTC
  CGTCTTCCTA ATTATAGAGG TTAACCTTAT CCAGTTCTTG GGGAGATAAG GCTGAGACAT
  CCCAGAGACC TACTTATGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322139531	CHEV_7_31912210	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245853151					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30826616 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	1766 bp distal
Cpgi18837	CpG island 18837	within coordinates
Rr645025	regulatory region 645025	358 bp distal
Rr645026	regulatory region 645026	within coordinates
Rr645027	regulatory region 645027	1303 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	188 bp upstream
Tssr71935	transcription start site region 71935	466 bp upstream
Tssr71936	transcription start site region 71936	419 bp upstream
Tssr71937	transcription start site region 71937	257 bp upstream
Tssr71938	transcription start site region 71938	199 bp upstream
Tssr71939	transcription start site region 71939	149 bp upstream
Tssr71940	transcription start site region 71940	14 bp upstream