rs245862627 SNP Detail

Summary

• ID
  rs245862627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115051137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACTTGAA CTCAGAGATC
  TCCTTACCTC AGTCTCCTGG GATTAAAGGC CTTGCCTGGG CCTAAGCTTT TCATGGCCAC
  TATGCCTCAA GACCTCCATG CCAAGATCCA GGTCAGAAAC TTGTGTCTTC CAGCCTCAAG
  ACCTGGATCA CAGGTGAGCC CTCCAATTCT GGATTGTAGT TCATCCCAGA TATAGTCAAG
  Y
  TGACACCCAG GAATAGCCAT TACAACAGGC AAGAGTAGAT CCACCCCAGC CCCTCATTAA
  ATACAGAAAT CAGTTTACGT ATCGGCCCCT TCATACATGC AGAATCCCAT GCATTTCTGT
  GAATGATATA CCAAAAAAAT CTCACAGACG ATGCCATCTG GCTATTTTCA CAGATGCCTT
  GGAGTTGGAC GGACTTGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366345418	MGP_WTSI_5_115363086	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245862627					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366345418	MGP_WTSI_5_115363086	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115051137 () rs orientation: forward

Symbol	Name	Function Class
Oasl2	2'-5' oligoadenylate synthetase-like 2	842 bp downstream
Tssr48141	transcription start site region 48141	1803 bp downstream
Tssr48142	transcription start site region 48142	1713 bp downstream
Tssr48143	transcription start site region 48143	1670 bp downstream
Tssr48144	transcription start site region 48144	1630 bp downstream
Tssr48145	transcription start site region 48145	1563 bp downstream
Tssr48146	transcription start site region 48146	1497 bp downstream
Tssr48147	transcription start site region 48147	1482 bp downstream
Tssr48148	transcription start site region 48148	1416 bp downstream
Tssr48149	transcription start site region 48149	1396 bp downstream
Tssr48150	transcription start site region 48150	1383 bp downstream
Tssr48151	transcription start site region 48151	1341 bp downstream
Tssr48152	transcription start site region 48152	1283 bp downstream
Tssr48153	transcription start site region 48153	1193 bp downstream
Tssr48154	transcription start site region 48154	1177 bp downstream