rs245862763 SNP Detail

Summary

• ID
  rs245862763
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126815794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGCCAT CACTATCGCA
  GAACCAAAGA GACCCCAGGA GTTGAGTTGT GGTGCCCCTC CCCCTTTCCT CTTAGTCAAG
  CATCTAGTTC CAGGGCTGTA TGACCGGTCT GTTCTGAGCC TGAGCCCTTA GGGCCATGGT
  GCTTGTGGCA GGATCATAAC CCTTTCCTCA CCCCACCCCC AAAAAGGTCA CCCCAAGATT
  W
  AAAAAAAAGT CCAGACAGAC AAGGTTGAAT CATGGCCTTG GCTGTCACTT AGGGGCCTCA
  GCCATACCTT CTGCTTGAGG GCCTGAGTCT CCCTAGGCAT CAGGGCGTCT GCTTTACCGA
  TGACCGGGAT GATATTGACT TTCTCGTGCA CTGCCCGGAG GAAAGCCACA TCTAGGGGCC
  GGAGCCTGTT TCAGGGATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373083333	MGP_WTSI_7_134360136	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245862763					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373083333	MGP_WTSI_7_134360136	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126815794 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	1715 bp distal
Cpgi19732	CpG island 19732	1138 bp distal
Gm71806	predicted gene, 71806	1877 bp upstream
Rr368445	regulatory region 368445	1395 bp upstream
Rr655747	regulatory region 655747	1161 bp distal
Rr655748	regulatory region 655748	1671 bp proximal
Rr655749	regulatory region 655749	1904 bp proximal
Septin1	septin 1	within coordinates
Tssr2404	transcription start site region 2404	1890 bp upstream
Tssr74961	transcription start site region 74961	1859 bp upstream
Tssr74962	transcription start site region 74962	1589 bp upstream
Tssr74963	transcription start site region 74963	1552 bp upstream
Tssr74964	transcription start site region 74964	1519 bp upstream
Tssr74965	transcription start site region 74965	1273 bp upstream
Tssr74966	transcription start site region 74966	1179 bp upstream
Tssr74967	transcription start site region 74967	927 bp upstream
Tssr74968	transcription start site region 74968	1387 bp downstream
Tssr74969	transcription start site region 74969	1749 bp downstream
Tssr74970	transcription start site region 74970	1776 bp downstream
Tssr74971	transcription start site region 74971	1845 bp downstream