rs245866667 SNP Detail

Summary

• ID
  rs245866667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108532339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGTCTTT TTAAAAAGAT
  TTATCTGCCG GGCATGGTGG CGCACGCCTT TAATCCCAGC ACTCGGGAGG CAGAGGCAGG
  CGGATTTCTG AGTTCGAGGC CAGCCTGGTC TACAAAGTGA GTTCCAGGAC AGCCAGGGCT
  ATACAGAGAA ACCCTGTCTC AAAAAACCAA AAAATAAAAA TAAAAAATGA AAATATTTAT
  Y
  TATCTATTAC ACACACACAC ACACTGTCCC TATCTTCAGA CACACCAGAA GGAGGCATCA
  GATCCTATTA CAAATGATTG TAAGCCACTG TGTAGTTGCT GGGAATTGAA CTTAGGACCT
  TTGGAAGAGG TTATTGCAGA GAATCTGCGT TGAGGTTCTA GCAAGGGGAA GGGGTTGGTT
  GGTGGCTTAC AGCTACTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388616	CHEV_7_116076646	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245866667					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108532339 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	1134 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	198 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	1283 bp upstream
Rr400539	regulatory region 400539	1025 bp upstream
Rr652951	regulatory region 652951	429 bp distal
Rr652952	regulatory region 652952	795 bp proximal
Rr652953	regulatory region 652953	1015 bp proximal
Tssr68456	transcription start site region 68456	1273 bp upstream
Tssr68457	transcription start site region 68457	1385 bp upstream