rs245873249 SNP Detail

Summary

• ID
  rs245873249
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95740565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGCCCCT AGGCCAGCCA
  GGACTAAATA GTGAGACCTT GCCTCTGGAA AGACAAAGAC AAGAGAAAAA AGGGGGTGGG
  GGGAAGCAAA CCCCTTGTTT CTGTCAACCT CGAGAGTCAA AGGAGAACCG GGTTCCAATC
  AGAAATTAGC GCTTGCCACG CCCCTTCTGC GCTCTAGGTT TTCCTCTGTC AGGACACCGC
  M
  GCCATTGAGT TCTCAAGTCG GTTCTCTCAG GCTGGAAAGT TTGCACGTAG AGTTAGTGCT
  GACCTTAAGT CTGTGAGCTA TCAGTTTCCT TTTAGTTTTG CACCGCAGCG ATGTTCATTT
  CCTCCTGTTG GCCATACCAA AAACCGAAAA CCTAAATTAG AGGATAAATG AAAAGACCAC
  TTTTGTACTG TCTGAAGGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378563429	MGP_WTSI_9_95758931	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	C	A	A	A	A	A	C	C	C	A	C	A	A	A	A	A	A	C	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245873249					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	C	A	A	A	A	A	C	C	C	A	C	A	A	A	A	A	A	C	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378563429	MGP_WTSI_9_95758931	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95740565 () rs orientation: forward

Symbol	Name	Function Class
1700065D16Rik	RIKEN cDNA 1700065D16 gene	630 bp upstream
Atr	ataxia telangiectasia and Rad3 related	within coordinates
Cpgi22158	CpG island 22158	8 bp distal
Rr198099	regulatory region 198099	1436 bp proximal
Rr206894	regulatory region 206894	within coordinates
Rr368834	regulatory region 368834	801 bp downstream
Rr401608	regulatory region 401608	10 bp upstream
Tssr86577	transcription start site region 86577	826 bp downstream
Tssr86578	transcription start site region 86578	802 bp downstream
Tssr86579	transcription start site region 86579	561 bp downstream
Tssr90940	transcription start site region 90940	942 bp upstream
Tssr90941	transcription start site region 90941	636 bp upstream
Tssr90942	transcription start site region 90942	617 bp upstream