rs245876985 SNP Detail

Summary

• ID
  rs245876985
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142215952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGAGAAA CATACTCCCT
  GTTTTGTGGA TCAATAAAAA TTACCCAATG GATGATGAAA TCTAAATTGC AGGGAATAGA
  ATTAGTAGCT AGGAAATTTG TAAGACACAG ACCTTTAAAA CCTAGGAATT GGGGGATCTG
  GGACTTTTTT TTTCAGTGTG CTTTGGGGAC CATAAAACAT TATCCAAATA TAGGGAGACT
  M
  CAGTAGAAGT CATAAATTCA ACAAAGTTCA TTAAAGTTTA ATAAAAACCG AACTCTTTGG
  AAGAAAAAAA TCTCAATTTG TTTTGGAGTA CCTGAATTTG GGGGGGCCCA GGAAGATAAT
  TTCTGAATCT AAAGTTTCCT GGTCCTTCAG GGCCAGTCTC TACATTACAA GGAATAGAGA
  TTATGGGTTC CTAAATTATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454647	MGP_WTSI_7_149848120	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245876985					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454647	MGP_WTSI_7_149848120	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142215952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19967	CpG island 19967	1998 bp distal
Cpgi19968	CpG island 19968	780 bp distal
Cpgi19969	CpG island 19969	1632 bp proximal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Igf2os	insulin-like growth factor 2, opposite strand	within coordinates
Rr658254	regulatory region 658254	921 bp distal
Rr658255	regulatory region 658255	566 bp distal
Rr658256	regulatory region 658256	698 bp proximal
Tssr2464	transcription start site region 2464	1294 bp upstream
Tssr2465	transcription start site region 2465	1131 bp upstream
Tssr2466	transcription start site region 2466	1111 bp upstream
Tssr70249	transcription start site region 70249	1872 bp downstream
Tssr70250	transcription start site region 70250	1756 bp downstream
Tssr70251	transcription start site region 70251	1718 bp downstream
Tssr70252	transcription start site region 70252	1631 bp downstream
Tssr70253	transcription start site region 70253	1567 bp downstream
Tssr70254	transcription start site region 70254	1548 bp downstream
Tssr70255	transcription start site region 70255	1455 bp downstream
Tssr75890	transcription start site region 75890	1350 bp upstream
Tssr75891	transcription start site region 75891	1227 bp upstream
Tssr75892	transcription start site region 75892	1175 bp upstream
Tssr75893	transcription start site region 75893	1157 bp upstream
Tssr75894	transcription start site region 75894	1009 bp upstream
Tssr75895	transcription start site region 75895	977 bp upstream
Tssr75896	transcription start site region 75896	946 bp upstream
Tssr75897	transcription start site region 75897	928 bp upstream
Tssr75898	transcription start site region 75898	901 bp upstream
Tssr75899	transcription start site region 75899	358 bp upstream
Tssr75900	transcription start site region 75900	335 bp upstream