rs245887239 SNP Detail

Summary

• ID
  rs245887239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49593689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCTCTAT TCTCTCTCCC
  TCTCTCCCTC TCTTCCTCTC TTCCTCTCTT TCAATGGCAC AGTGAGGCTT TATCTAGGAT
  CCCTTCTTCC TCATTATCAT ACCCAGTCAT ATCCAAGACT CAGACAAGAG AACAACCACA
  GATCTCTAAA ACAAAGTACA ATTTTTTTTT TTTGGTATAA GTTGTTTTTC TCAGGTACTT
  Y
  TTAAAAAATA TAATCATGAA AAGCTGACTG ACACATCTAT GGTGTCACGT TTTATTGTGT
  AACTAAAGGG GTGTTATTTC CATTCACACA TATGAAAATG AGATCCAGAG TAGCTAAAAC
  AAAGGATGTA AGCCCATCAT GTCTTGTATA TGATATAGGA GGACACAAAT AACTCAAATT
  GCTTATGATG TCAAAATATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396236719	MGP_WTSI_16_49773439	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245887239					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396236719	MGP_WTSI_16_49773439	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49593689 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Gm60046	predicted gene, 60046	507 bp upstream
Gm60047	predicted gene, 60047	1960 bp upstream
Rr404848	regulatory region 404848	645 bp upstream
Rr516712	regulatory region 516712	1019 bp distal
Rr516713	regulatory region 516713	32 bp distal
Rr516714	regulatory region 516714	402 bp proximal
Rr516715	regulatory region 516715	518 bp proximal
Rr516716	regulatory region 516716	1861 bp proximal
Rr516717	regulatory region 516717	1971 bp proximal
Tssr4897	transcription start site region 4897	1910 bp upstream
Tssr138714	transcription start site region 138714	486 bp downstream
Tssr141333	transcription start site region 141333	1632 bp upstream
Tssr141334	transcription start site region 141334	1478 bp upstream
Tssr141335	transcription start site region 141335	541 bp upstream