rs245891875 SNP Detail

Summary

• ID
  rs245891875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:73102353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTGCCTGC GCCCTCATTG GGCGAGAGGC
  GCAGCCAGCG GCACTTCAAA GCGGGTGCTC CTCGCACTTA GGCTGAGTTT TGCCGGCGGG
  AGCCCAGAGT CCGCTCGGCG CGAGCGCGGG ACGCGGGAGC CGCGCGGGAC CTGAATCGTG
  R
  TTCCCAGCAG CCGCCAGGCT TAACACCGCT CCGGGCCTCG CCGCGCAGCC CAAAACCTGC
  TATGGCCACG TCTATACTTG GGGTAAGTGA AAAAGACTCG CTGCAAAGgc tttgctcatt
  tttgtttgtt ttgtttttgt gttgttggtg                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320344748	CHEV_2_73110066	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245891875					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73102353 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11766	CpG island 11766			806 bp distal
Cpgi11767	CpG island 11767			within coordinates
Cpgi11768	CpG island 11768			594 bp proximal
Rr559116	regulatory region 559116			1575 bp distal
Rr559117	regulatory region 559117			1305 bp distal
Rr559118	regulatory region 559118			74 bp distal
Sp9	trans-acting transcription factor 9			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr18369	transcription start site region 18369			70 bp downstream
Tssr18370	transcription start site region 18370			50 bp downstream