rs245891876 SNP Detail

Summary

• ID
  rs245891876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:65021852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGAACCaa aaaaaaaaaa aaaaaaaaaT
  TAGGTAGAAA ACTATTTCGA GCTTCATTAA TTTACATTCT GTATACTGCA AAGCTCTTAA
  GGAATATTAG AAAAATTTAG TAACATTAGA TAACATCCTA AAGTACCTAG CATAGTGCTA
  Y
  AGTAGCCATA CAAGGAAGAG GGAGACAGAA GCATCGGCTT TTAGACTATT GTTGTCTTTT
  GAGAATTCAA CTATATGACC AATTTAAACC TAATTCTAAC TTGGAAATAT CCATACATGA
  AATGTAAACA TCAATTAAGG TTTCAAAGTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322236099	CHEV_7_72516990	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245891876					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:65021852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19209	CpG island 19209	510 bp distal
Gm57226	predicted gene, 57226	within coordinates
Rr647945	regulatory region 647945	1100 bp distal
Rr647946	regulatory region 647946	791 bp distal
Rr647947	regulatory region 647947	165 bp distal
Rr647948	regulatory region 647948	1270 bp proximal
Tjp1	tight junction protein 1	Intron
Tssr67032	transcription start site region 67032	671 bp downstream
Tssr72804	transcription start site region 72804	1220 bp upstream
Tssr72805	transcription start site region 72805	1204 bp upstream
Tssr72806	transcription start site region 72806	1156 bp upstream
Tssr72807	transcription start site region 72807	817 bp upstream