rs245894539 SNP Detail

Summary

• ID
  rs245894539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:94007079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATACGTAC AGTCCGCTAT
  ACACAAATCT CCCTCATTTT ACTATGTGAG AAACAACAGC AAATGCCTAA GTTACTAACG
  CTGCCATGAA GAACACATCA TGCTCACAGT TTTGGTGTAG AACTCATGCT AAAGAGAAAG
  TGATGAGACC TTAATCACGT AGGAGGGCCT CATTAGAGCC TCGGATATTT AACTGTCAGT
  R
  AGACACATTA TGAGCGGGGG TAAAAAAAAA AAAAATCCAT GTGTGAAAAT TAGTACATTT
  CTGGATTAGA AACTGTGAGA ATTGCTAGGT GTGCCAGTGC CTGCACGCAT TTCTAAAATA
  TCATCAACTA CACACCGTAT TTCAAACAAA GCAATTTGAA ACTCTAAGCA ACACACTGAC
  AGTAACAAGC CTGAACAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321864601	CHEV_6_93980092	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245894539					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94007079 () rs orientation: forward

Symbol	Name	Function Class
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	within coordinates
Tssr62166	transcription start site region 62166	1259 bp upstream