rs245895434 SNP Detail

Summary

• ID
  rs245895434
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142208652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAACACAG CACAGCTTCA
  CTGTCCCACA GACTCCATGG AGACCAGAGG CCACACTGGA GTGGTTTGGA AAACAGGGAG
  GAGGAGGGGG TGAGCCCCTC GAGGGGGCCA TGGTGGACAC AGGTGTGGTC CCTGTACTTG
  GGGCCCGTCC TGAGGGGCCC ACCCCCAACC CCCATCGCTG AACTGTGACA GGAAGGGAAG
  M
  TAGGGCAGGA GAGAACAAGA CGGGAGGGGA GGAGTGAGGC ACCCAAAAAC CACTCCCTTC
  TCTTCTCCCG TCTTCCCCCT CTCCCCCACG GTCCGAGGTT GGGCTTGGGG CCCTCCTATC
  TGTGAAGCCC CTCCGTGCAG GAGTGGCTCT CGACCAAGGA CTGGTCCTGC AGTACCCATG
  AGCAGTAGTT GTTTCCAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454570	MGP_WTSI_7_149840820	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245895434					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454570	MGP_WTSI_7_149840820	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142208652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19966	CpG island 19966	465 bp distal
D7Mit46	DNA segment, Chr 7, Massachusetts Institute of Technology 46	1820 bp distal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Mir483	microRNA 483	9 bp downstream
Rr167001	regulatory region 167001	within coordinates
Tssr2462	transcription start site region 2462	1858 bp downstream
Tssr2463	transcription start site region 2463	1062 bp upstream
Tssr70229	transcription start site region 70229	1898 bp downstream
Tssr70230	transcription start site region 70230	1805 bp downstream
Tssr70231	transcription start site region 70231	1350 bp downstream
Tssr70232	transcription start site region 70232	1297 bp downstream
Tssr70233	transcription start site region 70233	1254 bp downstream
Tssr70234	transcription start site region 70234	1216 bp downstream
Tssr70235	transcription start site region 70235	1193 bp downstream
Tssr70236	transcription start site region 70236	1171 bp downstream
Tssr70237	transcription start site region 70237	1070 bp downstream
Tssr70238	transcription start site region 70238	1040 bp downstream
Tssr70239	transcription start site region 70239	910 bp downstream
Tssr70240	transcription start site region 70240	562 bp downstream
Tssr75862	transcription start site region 75862	1907 bp upstream
Tssr75863	transcription start site region 75863	1876 bp upstream
Tssr75864	transcription start site region 75864	1847 bp upstream
Tssr75865	transcription start site region 75865	1814 bp upstream
Tssr75866	transcription start site region 75866	1767 bp upstream
Tssr75867	transcription start site region 75867	1734 bp upstream
Tssr75868	transcription start site region 75868	1715 bp upstream
Tssr75869	transcription start site region 75869	1693 bp upstream
Tssr75870	transcription start site region 75870	1680 bp upstream
Tssr75871	transcription start site region 75871	1636 bp upstream
Tssr75872	transcription start site region 75872	1228 bp upstream
Tssr75873	transcription start site region 75873	1216 bp upstream
Tssr75874	transcription start site region 75874	1006 bp upstream
Tssr75875	transcription start site region 75875	969 bp upstream
Tssr75876	transcription start site region 75876	921 bp upstream
Tssr75877	transcription start site region 75877	862 bp upstream
Tssr75878	transcription start site region 75878	580 bp upstream
Tssr75879	transcription start site region 75879	539 bp upstream
Tssr75880	transcription start site region 75880	508 bp upstream
Tssr75881	transcription start site region 75881	769 bp downstream
Tssr75882	transcription start site region 75882	810 bp downstream
Tssr75883	transcription start site region 75883	1121 bp downstream
Tssr75884	transcription start site region 75884	1159 bp downstream
Tssr75885	transcription start site region 75885	1206 bp downstream
Tssr75886	transcription start site region 75886	1264 bp downstream