rs245900764 SNP Detail

Summary

• ID
  rs245900764
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142015219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACA GGGCTGGGCA GAGGCCTTTA
  K
  GCTGTCAGCT GCTTAAGGGC ATCTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322471355	CHEV_7_149647387	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245900764					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142015219 () rs orientation: forward

Symbol	Name	Function Class
D430042D18Rik	Riken cDNA D430042D18 gene	758 bp downstream
Lsp1	lymphocyte specific 1	within coordinates
Rr166987	regulatory region 166987	within coordinates
Rr166988	regulatory region 166988	1381 bp proximal
Rr400723	regulatory region 400723	581 bp downstream
Tssr2454	transcription start site region 2454	1 bp downstream
Tssr70170	transcription start site region 70170	650 bp downstream
Tssr70171	transcription start site region 70171	596 bp downstream