rs245902084 SNP Detail

Summary

• ID
  rs245902084
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:57173973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTC TGGTGTGATT AAAATTTTAC
  R
  AAGGATGACT TTCAGGTTAA AATAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325201090	CHEV_16_57353723	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245902084					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:57173973 () rs orientation: forward

Symbol	Name	Function Class
Cmss1	cms small ribosomal subunit 1	within coordinates
Filip1l	filamin A interacting protein 1-like	within coordinates
Rr517288	regulatory region 517288	323 bp distal
Rr517289	regulatory region 517289	428 bp proximal
Tssr138825	transcription start site region 138825	828 bp downstream
Tssr138826	transcription start site region 138826	785 bp downstream
Tssr138827	transcription start site region 138827	608 bp downstream
Tssr138828	transcription start site region 138828	575 bp downstream
Tssr138829	transcription start site region 138829	493 bp downstream
Tssr138830	transcription start site region 138830	355 bp downstream
Tssr138831	transcription start site region 138831	326 bp downstream
Tssr138832	transcription start site region 138832	302 bp downstream
Tssr141601	transcription start site region 141601	447 bp upstream
Tssr141602	transcription start site region 141602	413 bp upstream